The following structures for the management of the Programme have been set up:

Programme Implementing Body Responsible Institution
Managing Authority (MA) Ministry of Foreign Affairs and Trade of Hungary, Budapest
National Authority (NA) Ministry of Regional Development and EU Funds of the Republic of Croatia, Zagreb
Certifying Authority (CA) Hungarian State Treasury, Budapest, Hungary
Audit Authority (AA) Directorate General for Audit of the European Funds, Budapest, Hungary.
Joint Secretariat (JS) In Budapest and Pécs (Hungary), hosted by Széchenyi Programme Office Nonprofit Ltd. (SZPO)
JS Contact Points In Osijek and Čakovec (Croatia)
Control Bodies Hungary Széchenyi Programme Office Nonprofit Ltd.
Croatia Ministry of Regional Development and EU Funds of the Republic of Croatia, Zagreb

Monitoring Committee (MC) is the decision-making body which supervises and monitors the Programme implementation.